Alexander Lex

My research is on data visualization and human computer interaction. I design, build, and study interactive visual data analysis solutions to aid researchers in data driven fields, such as biology and medicine, in understanding and communicating complex data sets. I also investigate how to make visualization reproducable, how to integrate visualizations with computational workflows, and how to make data visualizations accessible to blind and low-vision users. Finally, I also develop infrastructure for crowd-sourced user studies.

Bio

I am an Associate Professor of Computer Science at the Scientific Computing and Imaging Institute and the Kahlert School of Computing at the University of Utah. I direct the Visualization Design Lab where we develop visualization methods and systems to help solve today’s scientific problems.

I am the recipient of an NSF CAREER award and multiple best paper awards or honorable mentions at IEEE VIS, ACM CHI, and other conferences. I also received a best dissertation award from my alma mater. I co-founded Datavisyn, a startup company developing visualization solutions for the pharmaceutical industry. I am an associate editor for IEEE TVCG and IEEE CG&A, and I served as area papers chair for IEEE VIS in 2021 and 2023. In addition to writing papers, our lab publishes a lot of visualization software. My most popular tool is UpSet, a set visualization technique. Other tools include reVISit, a platform for designing online user sutdies, MultiNet, a network visualization platform and trrack, a library for tracking provenance in interactive applications. You can find other software on our GitHub Page.

I currently serve as the Director of Graduate Studies for the Kahlert School of Computing, overseeing more than 500 graduate students. Before joining the University of Utah, I was a lecturer and post-doctoral visualization researcher at Harvard University. I received my PhD, master’s, and undergraduate degrees from Graz University of Technology. In 2011 I was a visiting researcher at Harvard Medical School.

Publications Projects Talks Teaching Press

Alexander Lex, PhD, MSc
Associate Professor

Contact
alex@sci.utah.edu
SCI Institute,
School of Computing,
University of Utah
72 South Central Campus Drive,
Salt Lake City, Utah 84112
Room: WEB 3887

Curriculum Vitae
Google Scholar
Twitter
GitHub

Office Hours: Fridays, 12:45-1:45pm

Publications

Preprints

Devin Lange, Robert Judson-Torres, Thomas A. Zangle, Alexander Lex
Aardvark: Composite Visualizations of Trees, Time-Series, and Images
Preprint, 2024

Maxim Lisnic, Zach Cutler, Marina Kogan, Alexander Lex
Visualization Guardrails: Designing Interventions Against Cherry-Picking in Interactive Data Explorers
Preprint, 2024

Haihan Lin, Maxim Lisnic, Derya Akbaba, Miriah Meyer, Alexander Lex
Here’s what you need to know about my data: Exploring Expert Knowledge’s Role in Data Analysis
Preprint, 2023

Peer-reviewed Journal and Conference Publications

Maxim Lisnic, Alexander Lex, Marina Kogan
‘Yeah, this graph doesn't show that’: Analysis of Online Engagement with Misleading Data Visualizations
SIGCHI Conference on Human Factors in Computing Systems (CHI) (to appear), 2024

Kiran Gadhave, Zach Cutler, Alexander Lex
Persist: Persistent and Reusable Interactions in Computational Notebooks
Computer Graphics Forum (EuroVis), to appear, 2024

Yiren Ding, Jack Wilburn, Hilson Shrestha, Akim Ndlovu, Kiran Gadhave, Carolina Nobre, Alexander Lex, Lane Harrison
reVISit: Supporting Scalable Evaluation of Interactive Visualizations
IEEE Visualization and Visual Analytics (VIS), 2023

Devin Lange, Shaurya Sahai, Jeff M. Phillips, Alexander Lex
Ferret: Reviewing Tabular Datasets for Manipulation
Computer Graphics Forum (EuroVis), 2023

Derya Akbaba, Devin Lange, Michael Correll, Alexander Lex, Miriah Meyer
Troubling Collaboration: Matters of Care for Visualization Design Study
SIGCHI Conference on Human Factors in Computing Systems (CHI), 2023

Maxim Lisnic, Cole Polychronis, Alexander Lex, Marina Kogan
Misleading Beyond Visual Tricks: How People Actually Lie with Charts
SIGCHI Conference on Human Factors in Computing Systems (CHI), 2023

Haihan Lin, Derya Akbaba, Miriah Meyer, Alexander Lex
Data Hunches: Incorporating Personal Knowledge into Visualizations
IEEE Transactions on Visualization and Computer Graphics, 2022

Kiran Gadhave, Zach Cutler, Alexander Lex
Reusing Interactive Analysis Workflows
Computer Graphics Forum (EuroVis), 2022

Devin Lange, Eddie Polanco, Robert Judson-Torres, Thomas A. Zangle, Alexander Lex
Loon: Using Exemplars to Visualize Large-Scale Microscopy Data
IEEE Transactions on Visualization and Computer Graphics (VIS), 2021
IEEE VIS 2021 Honorable Mention Award

Kiran Gadhave, Jochen Görtler, Zach Cutler, Carolina Nobre, Oliver Deussen, Miriah Meyer, Jeff Phillips, Alexander Lex
Predicting Intent Behind Selections in Scatterplot Visualizations
Information Visualization, 2021

Haihan Lin, Ryan A. Metcalf, Jack Wilburn, Alexander Lex
Sanguine: Visual Analysis for Patient Blood Management
Information Visualization, 2021

Carolina Nobre, Dylan Wootton, Zach Cutler, Lane Harrison, Hanspeter Pfister, Alexander Lex
reVISit: Looking Under the Hood of Interactive Visualization Studies
SIGCHI Conference on Human Factors in Computing Systems (CHI), 2021

Haihan Lin, Ryan A. Metcalf, Jack Wilburn, Alexander Lex
Sanguine: Visual Analysis for Patient Blood Management
Workshop on Visual Analytics in Healthcare at AMIA (VAHC), 2020

Jen Rogers, Austin H Patton, Luke Harmon, Alexander Lex, Miriah Meyer
Insights From Experiments With Rigor in an EvoBio Design Study
IEEE Transactions on Visualization and Computer Graphics (InfoVis), 2021

Zach Cutler, Kiran Gadhave, Alexander Lex
Trrack: A Library for Provenance-Tracking in Web-Based Visualizations
IEEE Visualization Conference (VIS), 2020

Carolina Nobre, Dylan Wootton, Lane Harrison, Alexander Lex
Evaluating Multivariate Network Visualization Techniques Using a Validated Design and Crowdsourcing Approach
SIGCHI Conference on Human Factors in Computing Systems (CHI), 2020

Katarina Furmanova, Samuel Gratzl, Holger Stitz, Thomas Zichner, Miroslava Jaresova, Alexander Lex, Marc Streit
Taggle: Scalable Visualization of Tabular Data through Aggregation
Information Visualization, 2019

Alex Bigelow, Carolina Nobre, Miriah Meyer, Alexander Lex
Origraph: Interactive Network Wrangling
IEEE Conference on Visual Analytics Science and Technology (VAST), 2019

G. Elisabeta Marai, Bruno Pinaud, Katja Bühler, Alexander Lex, John H. Morris
Ten Simple Rules to Create Biological Network Figures for Communication
PLOS Computational Biology, 2019

Carolina Nobre, Marc Streit, Miriah Meyer, Alexander Lex
The State of the Art in Visualizing Multivariate Networks
Computer Graphics Forum (EuroVis), 2019

Jen Rogers, Nicholas Spina, Ashley Neese, Rachel Hess, Darrel Brodke, Alexander Lex
Composer: Visual Cohort Analysis of Patient Outcomes
Applied Clinical Informatics, 2019

Carolina Nobre, Marc Streit, Alexander Lex
Juniper: A Tree+Table Approach to Multivariate Graph Visualization
IEEE Transactions on Visualization and Computer Graphics (InfoVis), 2019

Carolina Nobre, Nils Gehlenborg, Hilary Coon, Alexander Lex
Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs
IEEE Transactions on Visualization and Computer Graphics, 2019

Yan Zheng, Yi Ou, Alexander Lex, Jeff M. Phillips
Visualization of Big Spatial Data using Coresets for Kernel Density Estimates
IEEE Transactions on Big Data, early access, 2019

Jen Rogers, Nicholas Spina, Ashley Neese, Rachel Hess, Darrel Brodke, Alexander Lex
Composer: Visual Cohort Analysis of Patient Outcomes
Workshop on Visual Analytics in Healthcare at AMIA (VAHC 2018), 2018

Yan Zheng, Yi Ou, Alexander Lex, Jeff M. Phillips
Visualization of Big Spatial Data using Coresets for Kernel Density Estimates
IEEE Symposium on Visualization in Data Science (VDS), 2017

Sean McKenna, Alexander Lex, Miriah Meyer
Worksheets for Guiding Novices through the Visualization Design Process
IEEE Workshop on Pedagogy of Data Visualization (PDV), 2017

Ethan Kerzner, Alexander Lex, Crystal Lynn Sigulinsky, Timothy Urness, Bryan William Jones, Robert E. Marc, Miriah Meyer
Graffinity: Visualizing Connectivity In Large Graphs
Computer Graphics Forum (EuroVis), 2017

Thomas Geymayer, Manuela Waldner, Alexander Lex, Dieter Schmalstieg
How Sensemaking Tools Influence Display Space Usage
EuroVis Workshop on Visual Analytics (EuroVA), 2017

Michael Kern, Alexander Lex, Nils Gehlenborg, Chris R. Johnson
Interactive Visual Exploration And Refinement Of Cluster Assignments
BMC Bioinformatics, 2017

Jake R. Conway, Alexander Lex, Nils Gehlenborg
UpSetR: An R Package For The Visualization Of Intersecting Sets And Their Properties
Bioinformatics, 2017

Christian Partl, Samuel Gratzl, Marc Streit, Anne Mai Wassermann, Hanspeter Pfister, Dieter Schmalstieg, Alexander Lex
Pathfinder: Visual Analysis of Paths in Graphs
Computer Graphics Forum (EuroVis), 2016
EuroVis 2016 Honorable Mention Award

Samuel Gratzl, Alexander Lex, Nils Gehlenborg, Nicola Cosgrove, Marc Streit
From Visual Exploration to Storytelling and Back Again
Computer Graphics Forum (EuroVis), 2016

Hendrik Strobelt, Bilal Alsallakh, Joseph Botors, Brant Peterson, Mark Borowsky, Hanspeter Pfister, Alexander Lex
Vials: Visualizing Alternative Splicing of Genes
IEEE Transactions on Visualization and Computer Graphics (InfoVis ’15), 2016

Carolina Nobre, Alexander Lex
OceanPaths: Visualizing Multivariate Oceanography Data
Proceedings of the Eurographics Conference on Visualization (EuroVis ’15) - Short Papers, 2015

Christian Partl, Alexander Lex, Hendrik Strobelt, Anne Mai Wassermann, Hanspeter Pfister, Dieter Schmalstieg
ConTour: Data-Driven Exploration of Multi-Relational Datasets for Drug Discovery
IEEE Transactions on Visualization and Computer Graphics (VAST), 2014

Marc Streit, Alexander Lex, Samuel Gratzl, Christian Partl, Dieter Schmalstieg, Hanspeter Pfister, Peter Park, Nils Gehlenborg
Guided Visual Exploration of Genomic Stratifications in Cancer
Nature Methods, 2014

Alexander Lex, Nils Gehlenborg, Hendrik Strobelt, Romain Vuillemot, Hanspeter Pfister
UpSet: Visualization of Intersecting Sets
IEEE Transactions on Visualization and Computer Graphics (InfoVis), 2014

Samuel Gratzl, Nils Gehlenborg, Alexander Lex, Hanspeter Pfister, Marc Streit
Domino: Extracting, Comparing, and Manipulating Subsets across Multiple Tabular Datasets
IEEE Transactions on Visualization and Computer Graphics (InfoVis), 2014
IEEE InfoVis 2014 Honorable Mention Award

Thomas Geymayer, Markus Steinberger, Alexander Lex, Marc Streit, Dieter Schmalstieg
Show me the Invisible: Visualizing Hidden Content
Proceedings of the SIGCHI Conference on Human Factors in Computing Systems (CHI ’14), 2014
ACM CHI 2014 Honorable Mention Award

Cagatay Turkay, Alexander Lex, Marc Streit, Hanspeter Pfister, Helwig Hauser
Characterizing Cancer Subtypes using the Dual Analysis Approach in Caleydo StratomeX
IEEE Computer Graphics and Applications, 2014

Johnathan D Mercer, Balaji Pandian, Alexander Lex, Nicolas Bonnel, Hanspeter Pfister
Mu-8: Visualizing Differences between Proteins and their Families
BMC Proceedings, 2014

Samuel Gratzl, Alexander Lex, Nils Gehlenborg, Hanspeter Pfister, Marc Streit
LineUp: Visual Analysis of Multi-Attribute Rankings
IEEE Transactions on Visualization and Computer Graphics (InfoVis), 2013
IEEE InfoVis 2013 Best Paper Award

Alexander Lex, Christian Partl, Denis Kalkofen, Marc Streit, Anne Mai Wassermann, Samuel Gratzl, Dieter Schmalstieg, Hanspeter Pfister
Entourage: Visualizing Relationships between Biological Pathways using Contextual Subsets
IEEE Transactions on Visualization and Computer Graphics (InfoVis), 2013

Christian Partl, Alexander Lex, Marc Streit, Denis Kalkofen, Karl Kashofer, Dieter Schmalstieg
enRoute: Dynamic Path Extraction from Biological Pathway Maps for Exploring Heterogeneous Experimental Datasets
BMC Bioinformatics, 2013

Clemens Holzhüter, Alexander Lex, Dieter Schmalstieg, Hans-Jörg Schulz, Heidrun Schumann, Marc Streit
Visualizing Uncertainty in Biological Expression Data
Proceedings of the SPIE Conference on Visualization and Data Analysis (VDA), 2012

Marc Streit, Hans-Jörg Schulz, Alexander Lex, Dieter Schmalstieg, Heidrun Schumann
Model-Driven Design for the Visual Analysis of Heterogeneous Data
IEEE Transactions on Visualization and Computer Graphics, 2012

Alexander Lex, Marc Streit, Hans-Jörg Schulz, Christian Partl, Dieter Schmalstieg, Peter Park, Nils Gehlenborg
StratomeX: Visual Analysis of Large-Scale Heterogeneous Genomics Data for Cancer Subtype Characterization
Computer Graphics Forum (EuroVis), 2012
EuroVis 2012 3rd Best Paper Award

Christian Partl, Alexander Lex, Marc Streit, kalkofen, Karl Kashofer, Dieter Schmalstieg
enRoute: Dynamic Path Extraction from Biological Pathway Maps for In-Depth Experimental Data Analysis
Proceedings of the IEEE Symposium on Biological Data Visualization (BioVis ’12), 2012
IEEE BioVis 2012 Best Paper Award

Thomas Geymayer, Alexander Lex, Marc Streit, Dieter Schmalstieg
Visualizing the Effects of Logically Combined Filters
Proceedings of the Conference on Information Visualisation (IV ’2011), 2011

Alexander Lex, Hans-Jörg Schulz, Marc Streit, Christian Partl, Dieter Schmalstieg
VisBricks: Multiform Visualization of Large, Inhomogeneous Data
IEEE Transactions on Visualization and Computer Graphics (InfoVis), 2011

Markus Steinberger, Manuela Waldner, Marc Streit, Alexander Lex, Dieter Schmalstieg
Context-Preserving Visual Links
IEEE Transactions on Visualization and Computer Graphics (InfoVis'11), 2011
IEEE InfoVis 2011 Best Paper Award

Alexander Lex, Marc Streit, Ernst Kruijff, Dieter Schmalstieg
Caleydo: Design and Evaluation of a Visual Analysis Framework for Gene Expression Data in its Biological Context
Proceedings of IEEE Pacific Visualization Symposium (PacificVis), 2010

Alexander Lex, Marc Streit, Christian Partl, Karl Kashofer, Dieter Schmalstieg
Comparative Analysis of Multidimensional, Quantitative Data
IEEE Transactions on Visualization and Computer Graphics (InfoVis), 2010

Manuela Waldner, Werner Puff, Alexander Lex, Marc Streit, Dieter Schmalstieg
Visual Links across Applications
Proceedings of the Graphics Interface (GI), 2010
GI 2010 Best Student Paper Award

Heimo Müller, Robert Reihs, Stefan Sauer, Kurt Zatloukal, Marc Streit, Alexander Lex, Bernhard Schlegl, Dieter Schmalstieg
Connecting Genes with Diseases
Proceedings of the Conference on Information Visualisation (IV ’09), 2009

Manuela Waldner, Alexander Lex, Marc Streit, Dieter Schmalstieg
Design Considerations for Collaborative Information Workspaces in Multi-Display Environments
Proceedings of Workshop on Collaborative Visualization on Interactive Surfaces (CoVIS'09, VisWeek), 2009

Marc Streit, Alexander Lex, Heimo Müller, Dieter Schmalstieg
Gaze-Based Focus Adaption in an Information Visualization System
Proceedings of the Conference on Computer Graphics and Visualization and Image Processing (CGVCVIP), 2009

Marc Streit, Alexander Lex, Michael Kalkusch, Kurt Zatloukal, Dieter Schmalstieg
Caleydo: Connecting Pathways with Gene Expression
Bioinformatics, 2009

Commentary

Alexander Lex, Nils Gehlenborg
Points of view: Sets and intersections
Nature Methods, 2014

Thesis

Alexander Lex
Visualization of Multidimensional Data with Applications in Molecular Biology
Graz University of Technology, PhD Thesis, March 2012
Best Dissertation Award, awarded by "Forum Technology and Society", Graz University of Technology

Selected Posters

Jack Wilburn, Alexander Lex
ReVISit: Declarative Study Framework
NSF CIRC PI Meeting, 2023

Jack Wilburn, Alexander Lex
MultiNet: Multivariate Network Visualization
NSF CSSI PI Meeting, 2023

Kiran Gadhave, Hendrik Strobelt, Nils Gehlenborg, Alexander Lex
UpSet 2: From Prototype to Tool
Proceedings of the IEEE Information Visualization Conference – Posters (InfoVis ’19), 2019

Ilkin Safarli, Alexander Lex
TaMax: Visualizing Dense Multivariate Networks with Adjacency Matrices
Proceedings of the IEEE Information Visualization Conference – Posters (InfoVis ’19), 2019

Haihan Lin, Carolina Nobre, Amanda Bakian, Alexander Lex
Clipped Graphs: A Compact Time-Series Encoding
Proceedings of the IEEE Information Visualization Conference – Posters (InfoVis), 2019

Dylan Wootton, Ethan Ransom, Alexander Lex
Arctic Explorer: Visualization of Sea-Ice Concentration along Arctic Shipping Routes
Proceedings of the IEEE Information Visualization Conference – Posters (InfoVis), 2019

Alex Bigelow, Carolina Nobre, Alexander Lex, Miriah Meyer
Mure.js: Toward Flexible Authoring and Reshaping of Networks
Proceedings of the IEEE Information Visualization Conference - Posters (InfoVis), 2018

Jen Rogers, Nicholas Spina, Ashley Neese, Rachel Hess, Darrel Brodke, Alexander Lex
Composer: Visual Cohort Analysis of Patient Outcomes
Proceedings of the IEEE Information Visualization Conference - Posters, 2018

Carolina Nobre, Nils Gehlenborg, Hilary Coon, Alexander Lex
Lineage
Proceedings of the IEEE Information Visualization Conference - Posters (InfoVis), 2017

Funded Research Projects

ForeSITE: Forecasting and Surveillance of Infectious Threats and Epidemics
PI: Matthew Samore
Sponsor: Centers for Disease Control and Prevention
Duration: 2023-2028

Development and pre-clinical validation of Quantitative Imaging of Cell state Kinetics (QuICK) to inform selection of melanoma therapy
PI: Thomas Zangle
Sponsor: National Institutes of Health
Co-PI(s): Robert Judson-Torres
Duration: 2023-2028

Enhancing Loon: Increasing Robustness and Generalizing Input Formats for a Visualization Tool for Large-Scale Microscopy Data
PI: Alexander Lex*
Sponsor: National Institutes of Health
Co-PI(s): Thomas Zangle, Robert Judson-Torres
Duration: 2023-2024

reVISit: Scalable Empirical Evaluation of Interactive Visualizations
PI: Alexander Lex
Sponsor: The National Science Foundation
Co-PI(s): Lane Harrison
Duration: 07/01/2022-06/30/2025

Achieving Accessibility for UpSet Plots
PI: Alexander Lex
Sponsor: Chan Zuckerberg Initiative
Duration: 08/31/2022-08/31/2024

EAGER: Understanding and Mitigating Misinformation in Visualizations On Social Media
PI: Alexander Lex
Sponsor: The National Science Foundation
Co-PI(s): Marina Kogan
Duration: 01/01/2021-06/30/2022

Collaborative Research: Framework: Software: HDR: Reproducible Visual Analysis of Multivariate Networks with MultiNet
PI: Alexander Lex
Sponsor: The National Science Foundation
Co-PI(s): Miriah Meyer, Jeff Baumes, Curtis Lisle, Luke Harmon
Duration: 01/01/2019-12/31/2022

CAREER: Enabling Reproducibility of Interactive Visual Data Analysis
PI: Alexander Lex
Sponsor: The National Science Foundation
Duration: 04/01/2018-03/31/2024

Lineage: Integrating Clinical and Genetic Data with Genealogical Records
PI: Alexander Lex
Sponsor: The Utah Genome Project
Duration: 2018-2019

Increasing the State's Resiliency to Fluctuations in Defense Spending by Strengthening the Carbon Composite Sector Knowledge Base
PI: Gregory Jones
Sponsor: The Department of Defense
Duration: 2016-2018

Visual Analysis of Genomic and Clinical Data from Large Patient Cohorts
PI: Peter J. Park
Sponsor: National Institutes of Health
Duration: 2015-2018

Talks

Keynote Talks

Provenance as a Bridge Between Data Analysis Modalities Key | PDF

Workshop on Visualization and Provenance Across Domains, IEEE VIS, Melbourne, Australia, 2023-10-24

Visualization in Data Science: Challenges and Opportunities

Celebrating 30 Years of ICG, Graz University of Technology, Graz, Austria, 2023-06-12

Spatial Omics Visualizations: Lessons Learned from Networks and Maps Key | PDF

BioVis@VIS, IEEE VIS, New Orleans, USA (virtual), 2021-10-25.

Opportunities for Understanding Semantics of User Interactions Key | PDF

MLUI 2021: Machine Learning from User Interactions for Visualization and Analytics, IEEE VIS, New Orleans, USA (virtual), 2021-10-24.

What is Data Visualization and Why Do We Care About it for Biomedical Applications? Key | PDF

May Institute, Computation and statistics for mass spectrometry and proteomics, Northeastern University, Boston, MA, USA, 2019-05-06.

Invited Talks

Visualization in Oncological Data Science Now and in the Future: From Cancer Cell Microscopy to Reproducible Visual Analysis Key | PDF

Oncological Data Science Symposium, ODSi, Huntsman Cancer Institute, Utah, 2023-02-28

Empirical Evaluation of Complex Interactive Visualization Techniques Video | Key | PDF

SCI VIS Seminar, University of Utah, USA, 2022-08-31.

Institute for Computer Graphics, TU Wien, Vienna, Austria, 2022-06-03.

Literate Visualization: Making Visual Analysis Sessions Reproducible and Reusable Video | Key | PDF

Visualization Summer School of Zhejiang University, China (virtual), 2022-07-07.

VRVis Zentrum für Virtual Reality und Visualisierung, Vienna, Austria, 2022-03-24.

Graz University of Technology, Graz, Austria, 2021-11-11.

Séminaire LIRIS, CNRS / INSA Lyon / Université Lyon 1 & 2 / École Centrale de Lyon, Lyon, France, 2021-10-18.

Visualization of Biological Data - From Analysis to Communication, Dagstuhl Seminar, Schloss Dagstuhl, Germany, 2021-10-04.

Datavisyn Public Lecture Series, datavisyn, Linz, Austria, 2021-07-02.

ICG Lab Talk, Johannes Kepler University, Linz, Austria, 2021-06-15.

Departmental Seminar, Department of Computer Science, City University London, London, UK (virtual), 2020-11-17.

Goldman Sachs Tech Expo, Salt Lake City, UT, USA, 2020-07-24.

Utah Center for Data Science Seminar, Salt Lake City, UT, USA, 2020-01-06.

Spatial Omics Visualizations: Lessons Learned from Networks and Maps Key | PDF

Worcester Polytechnic Institute, BCB Seminar Series, 2021-12-09.

Driving Scientific Discovery with Interactive Visual Data Analysis Key | PDF

Department of Computer Science, University of Copenhagen, Denmark, 2021-10-04

Institute for Science and Technology (IST) Austria, Klosterneuburg, Austria, 2020-02-25.

A Framework for Creative Visualization-Opportunities Workshops PDF

NIH-NCI Workshop on Accelerating Cancer Research through User-Centered Software Design, Washington, DC, USA, 2019-01-07.

Enabling Scientific Discovery through Interactive Visual Data Analysis Key | PDF

Adobe, Lehi, UT, USA, 2019-04-10.

Lucid Software, Salt Lake City, UT, USA, 2019-03-12.

Goldman Sachs Tech Expo, Salt Lake City, UT, USA, 2017-06-28.

Department Of Biomedical Informatics, University of Utah, Salt Lake City, UT, USA, 2017-04-06.

Walmart, Tech Tuesday, Bentonville, AK, USA, 2017-02-07.

Marth Lab, Department of Human Genetics, University of Utah, Salt Lake City, UT, USA, 2016-08-25.

Pacific Northwest National Laboratory, Richland, WA, USA, 2016-07-01.

Huntsman Cancer Institute, Salt Lake City, UT, USA, 2016-03-30.

Camp Lab, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT, USA, 2015-11-23.

Layout Adaption Strategies for Visualizing Multivariate Networks Key | PDF

University of Calgary, Calgary, AB, Canada, 2018-06-18.

Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs Key | PDF

NIH-NCI Workshop on Accelerating Cancer Research through User-Centered Software Design, Washington, DC, USA, 2019-01-07.

Genome Rounds, University of Utah, SLC, UT, USA, 2018-08-24.

Department of Psychiatry, University of Utah, SLC, UT, USA, 2018-06-05.

BioIT World Conference & Expo, Boston, MA, USA, 2018-05-17.

Harvard John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, USA, 2018-05-16.

Visualizing Biological Data: Pathway Graphs, Genealogies, and Alternative Splicing Key | PDF

Helmholtz Diabetes Center, Munich, Germany, 2018-10-29.

Translational Genomics Research Institute (TGen), Phoenix, AZ, USA, 2018-08-14.

Association for Molecular Pathology (AMP) Annual Meeting, Salt Lake City, UT, USA, 2017-11-17.

Merck Research Laboratories, Boston, MA, USA, 2017-06-15.

Department Of Biomedical Informatics, Harvard Medical School, Boston, MA, USA, 2017-06-14.

Enabling Scientific Discovery through Interactive Visual Data Analysis PPT | PDF

University of Vienna, Vienna, Austria, 2015-08-07.

Adobe Research, San Francisco, CA, USA, 2015-04-06.

EPFL, Lausanne, Switzerland, 2015-03-26.

University of Utah, Salt Lake City, UT, USA, 2014-12-03.

University of St. Andrews, St. Andrews, Scotland, 2014-11-03.

UpSet: Visualization of Intersecting Sets PPT | PDF

Data Ventures, Harvard University, Cambridge, MA, USA, 2015-04-23.

BioIT World Conference & Expo, Boston, MA, USA, 2015-04-22.

Tufts University, Sommerville, MA, USA, 2014-10-29.

Visual Data Analysis for Biology and Pharmacology PPT | PDF

PerkinElmer, Boston, MA, USA, 2014-11-05.

Novartis Institutes for BioMedical Research, Cambridge, MA, USA, 2014-07-09.

Visualizing Relationships between Biological Pathways PPT | PDF

Drug Discovery on Target Conference, Boston, MA, USA, 2014-10-08.

BioIT World Conference & Expo, Boston, MA, USA, 2014-05-01.

DBMI, Harvard Medical School, Boston, MA, USA, 2014-04-17.

Visualization Approaches for Biomolecular Data PPT | PDF

Georgia Tech, School of Interactive Computing, Atlanta, GA, USA, 2014-04-08.

University of Calgary, Department of Computer Science, Calgary, AB, Canada, 2014-02-13.

MIT CSAIL, Cambridge, MA, USA. 2013-04-12.

UMass Lowell, Lowell, MA, USA, 2013-11-06.

Visualizing Multi-Attribute Rankings & A Very Short Visualization Introduction PPT | PDF

Harvard Graduate School of Education, Strategic Data Project, Cambridge, MA, USA, 2014-03-07.

Data Visualization in Molecular Biology PPT | PDF

Novartis Institutes for BioMedical Research, Cambridge, MA, USA, 2013-07-29.

enRoute: Dynamic Path Extraction from Biological Pathway Maps for Exploring Heterogeneous Experimental Datasets PPT | PDF

BioIT World Conference & Expo, Boston, MA, USA, 2013-04-10.

Visualizing Biological Data (VIZBI) 2013, Cambridge, MA, USA, 2013-03-20.

Symposium on Understanding Cancer Genomics through Information Visualization at Tokyo University, Tokyo, Japan, 2013-02-22.

Visualizing Biomolecular Data with the Caleydo Framework PDF

CBMI, Harvard Medical School, Boston, MA, USA, 2011-08-12.

MRC Laboratory of Molecular Biology (LMB), Cambridge, UK, 2010-09-21.

European BioInformatics Institute (EBI), Cambridge, UK, 2010-09-20.

Caleydo: Visual Analysis of Biomolecular Data

VCBM 2010 Leipzig, Germany, 2010-07-02.

Caleydo and Visual Links

VRVis Research Company, Vienna, Austria. 2010-03-11.

Caleydo: Visualization of Gene Expression Data in the Context of Biological Processes

AUVA Research Center for Traumatology, Vienna, Austria, 2009-02-26.

Novel InfoVis Techniques Applied to Pathways and Gene Expression Data

Institute for Genomics and Bioinformatics, Graz University of Technology, Austria, 2008-07-10.

Paper Presentations

Pathfinder: Visualizing Paths in Graphs Key | PDF

BioVis @ ISMB, Orlando, FL, USA, 2016-07-08.

UpSet: Visualization of Intersecting Sets PPT | PDF

IEEE InfoVis, Paris, France, 2014-11-03.

StratomeX: Visual Analysis of Large-Scale Heterogeneous Genomics Data for Cancer Subtype Characterization PDF

IEEE BioVis 2012, Seattle, Washington, USA, 2012-10-14.

EuroVis 2012, Vienna, Austria, 2012-06-07.

VisBricks: Multiform Visualization of Large, Inhomogeneous Data PDF

IEEE InfoVis 2011, Providence, Rhode Island, USA, 2011-10-26.

Visualizing the Effects of Logically Combined Filters PDF

Information Visualization 2011, London, UK. 2011-07-14.

Comparative Analysis of Multidimensional, Quantitative Data PDF

IEEE InfoVis 2010, Salt Lake City, Utah, USA. Paper presentation, 2010-10-28.

Caleydo: Design and Evaluation of a Visual Analysis Framework for Gene Expression Data in its Biological Context

PacificVis 2010, Taipei, Taiwan. 2010-03-03.

Tutorials

Omics Visualization

Guest Lecture at Bio+Med+Vis, virtual, 2021-05-19.

Visualizing Multivariate Networks Key | PDF
Carolina Nobre, Marc Streit, and Alexander Lex
Companion Website

IEEE VIS 2019, Vancouver, BC, Canada, 2019-10-20.

StratomeX & enRoute: Integrative Visualization with Caleydo
Nils Gehlenborg and Alexander Lex

Visualizing Biological Data (VIZBI), Cambridge, MA, USA, 2013-03-20.

Cancer Data Analysis with Caleydo StratomeX and enRoute PPT | PDF
Alexander Lex and Marc Streit

Symposium on Understanding Cancer Genomics through Information Visualization, Tokyo University, Tokyo, Japan, 2013-02-22.

Connecting the Dots – Showing Relationships in Data and Beyond PPT | PDF
Marc Streit, Hans-Jörg Schulz, and Alexander Lex
Handout & References

VisWeek’12, Seattle, WA, USA, 2012-10.

Panels

Is the need for systems hindering the development of Visual Analytics?

Panel: What is a Visual Analytics contribution, and how is it changing?, IEEE VIS, 2023-10-25.

Ethics, Reviewing and Discussion Culture at VIS

Panel: Is This (Panel) Good Enough for IEEE VIS?, IEEE VIS, 2022-10-21.

How Can We Ensure Fair Pay for Study Participants?

Panel: Wait…when did we sign up to be economists?, IEEE VIS, 2021-10-29.

Visualization Response in a Time of Pandemic

Panel at VisGuides: 3rd Workshop on the Creation, Curation, Critique and Conditioning of Principles and Guidelines in Visualization, IEEE VIS, 2020-10-25.

Teaching

Current PhD Students

Kiran Gadhave | Provenance in Visualization Systems
Devin Lange | Cell Microscopy Visualization, Cancer Cell Visualization, Identifying Falsification in Scientific Data
Maxim Lisnic | Visual Misinformation, Social Informatics
Zach Cutler | Visualization tools, Provenance, Storytelling
Ishrat Jahan Eliza | Human Centered Computing, Accessibility, Humen Centered Data Science

Graduated PhD Students

Haihan Lin, PhD '23, Now at Lucid Software
Jen Rogers, PhD '22, Now PostDoc at Tufts University
Carolina Nobre, PhD '20, Now Faculty at the University of Toronto
Christian Partl, PhD '18 (co-advised with Dieter Schmalstieg)

Current Undergraduate Students

Zoe Exelbert | Data Visualization, Storytelling, Environmental Data Science,

Former Students

Sunny Siu, BS/MS '21
Shaurya Sahai, MS '21
Zach Cutler | Visualization tools, Provenance, Storytelling
Pranav Rajan, B.S.'21
Hannah Bruns, BS '20
Max Marno, PhD rotation '20
Ilkin Safarli
Sai Varun, MS '20
Dylan Wootton, BS '19, Now PhD student at MIT
Shuvrajit Mukherjee
T Cameron Waller
Pranav Dommata, MS '18
Sahar Mehrpour, PhD rotation '17
Mengjiao Han, PhD rotation '17
Asmaa Aljuhani, PhD rotation '17
Annie Cherkaev, PhD rotation '17
Sunny Hardasani, MS '16
Anirudh Narasimhamurthy, MS '16
Michael Kern, MS '16
Murali Krishna Teja Kilari, MS '17
Sateesh Tata, MS '16
Roy Bastien, BS '16
Priyanka Parekh, BS '16
Shreya Singh, MS '15
Varsha Alangar, MS '15
Rasvan Iliescu, MS '14
Alain Ibrahim, MS '14
Tamar Rucham, MS '14
Gabriel Hase, MS '14
Conor Myhrvold, MS '14
Ran Sofia Hou, BS '13 (co-advised with Joe Blitzstein)
Thomas Geymayer, MS '12, BS '11 (with D. Schmalstieg)
Christian Partl, MS '12 (with D. Schmalstieg)
Michael Lafer, BS '10 (with D. Schmalstieg)
Hannes Plank, BS '11 (with D. Schmalstieg)
Jürgen Pillhofer, MS '10 (with D. Schmalstieg)
Michael Wittmayer, BS '09 (with D. Schmalstieg)
Helmut Pichlhöfer, BS '10 (with D. Schmalstieg)
Oliver Pimas, BS '10 (with D. Schmalstieg)
Bernhard Schlegl, MS '09 (with D. Schmalstieg)
Werner Puff, MS '10 (with D. Schmalstieg)
Christian Partl, BS '09 (with D. Schmalstieg)
Stefan Sauer, BS '09 (with D. Schmalstieg)

Courses

Applied Data Visualization | COMP 5960
Fall 2023, Fall 2024
https://www.dataviscourse.net/2023-applied/

Professional Development | CS 4011
Spring 2024

Human Centered Data Analysis | CS 6957
Spring 2023

Visualization for Data Science | CS 5630 / CS 6630
Fall 2022, Fall 2020, Fall 2019, Fall 2018, Fall 2017, Fall 2016, Fall 2015
http://dataviscourse.net

Introduction to Data Science | COMP 5360 / MATH 4100
Spring 2018, Spring 2019, Spring 2020, Spring 2021
http://datasciencecourse.net
Co-Instructor: Braxton Osting

Introduction to Data Science | CS 5963 / MATH 3900
Fall 2016
http://datasciencecourse.net
Co-Instructor: Braxton Osting

Visualization Seminar | CS 7942
Spring 2018, Fall 2017, Spring 2017, Fall 2016

Visualization | CS 171 (Harvard)
Spring 2015
http://www.cs171.org/2015/

BioVis | (JKU Linz)
Spring 2013

Selected Topics Computer Graphics | (TU Graz)
Fall 2010, Fall 2011, Fall 2012